VFVS_GK running without results

VFVS VFVS 1
#1

Dear VF developers:
I’m currently working on VFVS_GK tutorials. I followed instructions of the tutorial, but I got 0 ligands completed when I used the vf_report.sh script to monitor the process.
I submitted jobs with slurm, and I got no warnings and errors in the logs. Please reply to me if anything occurs to you.

Best wishes,
Han

#2

Dear Han,

Welcome to the forum.

Have you been able to solve the problem in the meantime? If not, have you followed the trouble shooting steps of the tutorial?

Best,
Christoph

#3

Yes, I also cannot get any results. This is the output of the error.

                                         Workflow Status                                        
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::


                                             Joblines    
................................................................................................

 Number of jobfiles in the workflow/jobfiles/main folder: 12
 Number of joblines in the batch system: 12
 Number of joblines in the batch system currently running: 12
  * Number of joblines in queue "fast" currently running: 12
 Number of joblines in the batch system currently not running: 0
  * Number of joblines in queue "fast" currently not running: 0
 Number of cores/slots currently used by the workflow: 12


                                            Collections    
................................................................................................

 Total number of ligand collections: 68
./vf_report.sh: line 303: bc: command not found
Error was trapped which is a nonstandard error.
Error in bash script vf_report.sh
Error on line 303
Cleaning up and exiting...