VFLP vs VFVS changed environment needs?

VFLP
#1

Hi,

I have VFVS up and running, and one major hurdle was configuring an LSF environment to get it running.

I’m trying to get VFLP going now, using the same environment, but it’s failing. I am having trouble determining why. I have vftools, OpenBabel, JAVA14, jchemsuite (and license file), and nailgun installed - hence I don’t think this has to do with any external prerequisites.

Is there some difference in the cluster environments needed to get VFLP vs VFVS running successfully?

Thanks,
Chris

#2

Hi Chris,

one issue could be jchemsuite. It depends on which version you have. ChemAxon recently remove a component in jchemsuite from the free academic license which VFLP uses. So I would recommend to look at the logfiles in the workflow/output-files/queues/… folders to find out the error.

Best,
Christoph

#3

Thanks for your response Christoph,

I’ve been trying to work this out but still running into issues. Despite have ligands set up in the correct hierarchy and the same environment as VFVS, the program doesn’t actually make it far enough to produce logfiles in workflow/output-files/queues/

Theoretically, the environment should be the same and once we input metatranches containing ligands (.smi format) and the external packages it should successfully run correct? There’s nothing else that should need to be changed in an LSF environment?

Thanks,
Chris