./vf_report.sh -c workflow ligand collections processing or not started

VFVS VFVS 1
#1

After all batch jobs have finished I run
./vf_report.sh -c workflow
as you can see in the following output there are no jobs running or not running but there are still ligand collections in state “processing” or not yet started. What does this mean?
Is there a way to restart or proceed the “processing” of the stuck ligand collections?
Or maybe is there a way to extract them and run them separately?
Thank you


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                                  Mon Jun 28 14:59:44 EDT 2021                                       


                                         Workflow Status                                        
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::


                                             Joblines    
................................................................................................

 Number of jobfiles in the workflow/jobfiles/main folder: 1000
 Number of joblines in the batch system: 0
 Number of joblines in the batch system currently running: 0
 Number of joblines in the batch system currently not running: 0
 Number of cores/slots currently used by the workflow: 0


                                            Collections    
................................................................................................

 Total number of ligand collections: 4614
 Number of ligand collections completed: 4546
 Number of ligand collections in state "processing": 12
 Number of ligand collections not yet started: 56                                   


                                 Ligands (in completed collections)   
................................................................................................

 Total number of ligands: 4663111                                                     
 Number of ligands started: 4602036                                                     
 Number of ligands successfully completed: 4592555                                                
 Number of ligands failed: 9481                                                


                                Dockings (in completed collections)   
................................................................................................

 Docking runs per ligand: 1
 Number of dockings started: 4602036                                                     
 Number of dockings successfully completed: 4592555                                                
 Number of dockings failed: 9481
#2

Dear Evangelos,

Seeing also your other thread/question, it seems you were able to solve this problem already, is that right?

Best,
Christoph

#3

Well the question is why and how to resolve the issue that the
Total number of ligands: 4663111
but Number of ligands started: 4602036

So why
Number of ligand collections in state “processing”: 12
Number of ligand collections not yet started: 56
Although there are 0 joblines in the batch running or not?
and how to start the particular missing collections?

Will the vf_continue_all.sh resolve this issue?