One of my jobline seems to be stuck in a loop and has been submitting very small jobs, of around 2 minutes for over 2 days continously, without being able to refill the ligands. It seems to be that the todo.all file in workflow/ligand-collections/todo/ is empty but
./vf_report.sh -c workflow shows that that just a couple of ligands left (5k out of 15M).
todo.all.locked file has been created in
/tools/helpers/ but when I want to inspect the file it says file doesnt exist.
Furthermore, every submitted job shows the folling error in the logfile:
Preparing the to-do lists for jobline 5 Sun Aug 2 09:28:22 CEST 2020 prepare-todolists.sh: line 98: 10#locked: value too great for base (error token is "10#locked") wc: todo.all.locked: No such file or directory ln: failed to create symbolic link './todo.all.locked': File exists The next todo list will be used () cp: omitting directory '../../workflow/ligand-collections/todo/' There is no more ligand collection in the todo.all file. Stopping the refilling procedure. Starting job step 1 on host